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For example, take the following input to JRoute::_:
ContentHelperRoute::getCategoryRoute($cat_row->id, $sec_row->id . '&layout=blog' );

This will produce a link like: http://127.0.0.1/j15dev/more-about-joom ... ayout=blog

Since JRoute doesn't parse the layout=blog and put it in the URL, it tacks it on the end of the URL.  This is fine, except that it should instead be:
http://127.0.0.1/j15dev/more-about-joom ... ayout=blog
So that PHP/Joomla! can properly parse the variables.

Ian