katers wrote:
Thank you, I appreciate it.
My host is trying to put the sites up for me, but he is not too familur with Joomla so it is hard to say if they can be saved.
I apologize for my sarcastic answer earlier

It is frustrating to see the cries for help that arent helpful. Still, its a natural outburst on your part and I should have been more understanding.
anyway...
1st plan of action.
Dont plan on "saving anything"
your jos_components and Jos_modules tables should show what you have installed, even if you cant get to the physical directories to list them directly.You should blow them away anyway, totally clean, and check for CRON processes that may have been setup.
Since they had access to your server, and by extension, access to YOU (the risk of a browser injected Trojan or virus while currently somewhat small, is serious enough to require you do a full Virus/rootkit scan of your PC,change passwords etc.)
You may want to (and depending on your state, be forced to) report this to your users and have them take precautions as well.
Wipe everything clean.
put in an HTACCESS file that restricts access to your server while you reinstall
Do a full base RE install of Joomla 1.012
install your components and modules (after checking the 3rd party security advisories )
Do a LOCK DOWN of your permissions.
selectively restore in phpMyAdmin your joomla content and info ( start a new thread for how to and PM one of us who responded here so we dont miss it)
list if you could, the name of your host, the exact version of SMF you were using and those of the mods/add ons as well.
Moderators: would it be too hard to do a mod that forces first time posters in this particular board to read a sticky or fill out a trouble form that evokes information that would be useful in getting the help going (and advises against posting info that would not? i.e. diatribes against the hacker,etc?)