I run multiple subdomains on Godaddy.com - They recently made a change where the creation of the subdomain will now properly set the correct "root" for the subdomain - this was broken for my in 6/2006.
My Htaccess file looks like this. I install joomla into subdirectories under the root, and rely on godaddys parent rules to set the initial directory:
Options FollowSymlinks
# turn mod_rewrite on
RewriteEngine On
RewriteBase /
# If request is for yourdomain.com
RewriteCond %{HTTP_HOST} ^yourmaindomain\.com
# Then redirect to
http://www.yourdomain.comRewriteRule (.*)
http://www.yourdomain.com/$1 [R=301,L]
# If request is for direct access to /dev subdirectory, redirect to dev.yourdomain.com
RewriteCond %{HTTP_HOST} ^(www\.)?yourmaindomain\.com
RewriteCond %{THE_REQUEST} ^[A-Z]+\ /dev
# Then redirect to dev.yourdomain.com
RewriteRule ^dev(.*)
http://dev.yourdomain.com$1 [R=301,L]
# If request is for direct access to /photos subdirectory, redirect to photos.yourdomain.com
RewriteCond %{HTTP_HOST} ^(www\.)?yourmaindomain\.com
RewriteCond %{THE_REQUEST} ^[A-Z]+\ /photos/
# Then redirect to photos.yourdomain.com
RewriteRule ^photos(.*)
http://photos.yourdomain.com$1 [R=301,L]
# If request is for direct access to /SUBDIRECTORYtest subdirectory, redirect to test.yourdomain.com
RewriteCond %{HTTP_HOST} ^(www\.)?yourmaindomain\.com
RewriteCond %{THE_REQUEST} ^[A-Z]+\ /SUBDIRECTORYtest
# Then redirect to test.yourdomain.com
RewriteRule ^SUBDIRECTORYtest(.*)
http://test.yourdomain.com$1 [R=301,L]
# If request is for direct access to /SUBDIRECTORYhist subdirectory, redirect to family.yourdomain.com
RewriteCond %{HTTP_HOST} ^(www\.)?yourmaindomain\.com
RewriteCond %{THE_REQUEST} ^[A-Z]+\ /SUBDIRECTORYhist
# Then redirect to family.yourdomain.com
RewriteRule ^SUBDIRECTORYhist(.*)
http://family.yourdomain.com$1 [R=301,L]
# If request is for direct access to /SUBDIRECTORYchat subdirectory, redirect to forums.yourdomain.com
RewriteCond %{HTTP_HOST} ^(www\.)?yourmaindomain\.com
RewriteCond %{THE_REQUEST} ^[A-Z]+\ /SUBDIRECTORYchat
# Then redirect to family.yourdomain.com
RewriteRule ^SUBDIRECTORYchat(.*)
http://forums.yourdomain.com$1 [R=301,L]
# Where to go for error documents - Note that the reference is from the re-written ROOT of the subdomain
# This means that dev.yourdomain.com errors look for /dev/errors/missing.html
# and
http://www.yourdomain.com errors look for /errors/missing.html
ErrorDocument 404 /errors/missing.html
# Page to show for prohibited documents
ErrorDocument 403 /errors/missing.html
########## Begin Standard SEF Section
## ALL (RewriteCond) lines in this section are only required if you actually
## have directories named 'content' or 'component' on your server
## If you do not have directories with these names, comment them out.
#
#RewriteCond %{REQUEST_FILENAME} !-f
#RewriteCond %{REQUEST_FILENAME} !-d
#RewriteCond %{REQUEST_URI} ^(/component/option,com) [NC,OR] ##optional - see notes##
#RewriteCond %{REQUEST_URI} (/|\.htm|\.php|\.html|/[^.]*)$ [NC]
#RewriteRule ^(content/|component/) index.php
#
########## End Standard SEF Section
########## Begin - 3rd Party SEF Section
############# Use this section if you are using a 3rd party (Non Joomla! core) SEF extension - e.g. OpenSEF, 404_SEF, 404SEFx, SEF Advance, etc
#
# RewriteCond %{REQUEST_URI} ^(/component/option,com) [NC,OR] ##optional - see notes##
RewriteCond %{REQUEST_URI} (/|\.htm|\.php|\.html|/[^.]*)$ [NC]
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule (.*) index.php
#
########## End - 3rd Party SEF Section
# Ensure only only our domain is hot-linking images for domain
RewriteCond %{HTTP_REFERER} !^$
RewriteCond %{HTTP_REFERER} !^http://(www\.|photos\.|test\.|dev\.)?yourdomain.com(/)?.*$ [NC]
RewriteRule .*\.(gif|jpg|jpeg|bmp|png)$
http://www.yourdomain.com/errors/theif.png [R,NC]
########## Begin - Rewrite rules to block out some common exploits
#
# Block out any script trying to set a mosConfig value through the URL
RewriteCond %{QUERY_STRING} mosConfig_[a-zA-Z_]{1,21}(=|\%3D) [OR]
# Block out any script trying to base64_encode crap to send via URL
RewriteCond %{QUERY_STRING} base64_encode.*\(.*\) [OR]
# Block out any script that includes a
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